Genetica Molecolare Umana Pdf To Excel

Genetica Molecolare Umana Pdf To Excel

Results To verify our hypothesis, we analyzed the involvement in Neuroblastoma (NB) pathogenesis of GTA genes localized at 1p, one of NB critical regions: through RT-PCR of fifty eight NB biopsies, we demonstrated the statistically significant reduction of the mRNA for NC2β (localized at 1p22.1) in 74% of samples (p = 0.0039). Transcripts from TAF13 and TAF12 (mapping at 1p13.3 and 1p35.3, respectively) were also reduced, whereas we didn't detect any quantitative alteration of the mRNAs from GTF2B and NC2α (localized at 1p22-p21 and 11q13.3, respectively). We confirmed these data by comparing tumour and constitutional DNA: most NB samples with diminished levels of NC2β mRNA had also genomic deletions at the corresponding locus. Transcription initiation, the most important and regulated event along the pathway connecting genotype to phenotype, is governed by the General Transcription Apparatus (GTA): GTA proteins constitute the PreInitiation Complex (PIC) and guide its assembly [,, ]. Class II PIC, larger than 2 MDa, comprises more than fifty different polypeptides, including RNA polymerase II, GTFs, Mediator [,, ]. GTF2D consists of the TATA Box – Binding Protein (TBP) and TBP – Associated Factors (TAFs), a group of evolutionarily conserved proteins that participate in determining the state of chromatin, contribute to promoter recognition, serve as coactivators, and post-translationally modify other GTA proteins to facilitate PIC assembly and transcription initiation [, ]. Its DNA binding activity is regulated by positive and negative cofactors such as heterodimeric NC2 (also named Dr1/Drap 1), comprised of α- and β-type subunits [, ].

The molecular actions of GTA proteins were clarified through an extensive series of studies [,,,, ]. On the other hand, only scanty success was obtained in identifying their biological functions as well as in verifying their involvement in genetic pathology, including tumorigenesis [, ]. We examined the involvement of GTA proteins in the pathogenesis of Neuroblastoma (NB), exploiting our data and those from the literature on the genomics of GTA (see Additional file; reviewed in ref. [ ]) to perform the positional and functional gene candidate approach. NB is a group of early childhood tumours with a complex molecular pathogenesis [, ]. It is generally believed that the abnormally proliferating cell in all types of NB is the neuroblast, a fleeting stem cell that transiently appears during the early stages of mammalian development [ ]. NB clinical phenotype is remarkably heterogeneous, ranging from spontaneous regression to restless progression [, ].

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This variability is associated to a high genetic heterogeneity. Castle Care Tech 1600 Engineers Manual Woodworkers there. The most important genomic alterations in NB are interstitial deletions at 1p, 11q, 17q, and MYCN amplification [, ]. NB molecular phenotype is characterized by the altered expression of a plethora of genes belonging to different Gene Ontology categories: all of them are potential NB biomarkers [, ]. Our analysis was initially focused on human chromosome 1 short arm, where one or more NB master genes are thought to reside [, ]. In this region, we had previously mapped the genes encoding TAF13, GTF2B, NC2β, TAF12 to 1p13.3, 1p21-p22, 1p22.1, 1p35.3, respectively [,, ]. NB samples NB patients were 30 males and 28 females.